research-pigeon-1 A Text-to-Image Generator for Synthetic Biological Devices
Pigeon is a Web-based tool that translates a textual description of a synthetic biology design into an image. It allows programmatic generation of design visualizations, is easy to learn, is easily extensible to new glyphs and notation, and can be connected to other software tools for visualizing their output.

Click to visit the official Pigeon site.

Key features

  • Convert textual device designs into standardized graphics.
  • Color-code and label individual device elements.
  • Represent promoters, terminators, genes, and more using simple, one-letter codes.
  • Draw repression arcs to show functional relationships between device elements.

Launch Pigeon

Pigeon is free to use, and can be accessed through a web interface by clicking the button to the right.

TEST
Launch Pigeon

Selected Pigeon publications:

  • S. Bhatia and D. Densmore, “Pigeon: A Design Visualizer for Synthetic Biology,” ACS Synth Biol, vol. 2, iss. 6, pp. 348-350, 2013. doi:10.1021/sb400024s
    [BibTeX] [Download PDF]
    @ARTICLE{pmid23654259,
    author = {Bhatia, S. and Densmore, D.},
    title = {{{P}igeon: {A} {D}esign {V}isualizer for {S}ynthetic {B}iology}},
    journal = {ACS Synth Biol},
    year = {2013},
    volume = {2},
    pages = {348--350},
    number = {6},
    month = {Apr},
    doi = {10.1021/sb400024s},
    eprint = {http://pubs.acs.org/doi/pdf/10.1021/sb400024s},
    keywords = {design, pigeon, synthetic biology},
    owner = {Aaron Heuckroth},
    timestamp = {2013.09.16},
    url = {http://pubs.acs.org/doi/full/10.1021/sb400024s}
    }

Recent news stories for Pigeon

CIDAR Project Lead

Swapnil Bhatia, PhD swapnilb@bu.edu

Swapnil Bhatia, PhD
swapnilb@bu.edu

CIDAR Collaborators