research-clotho A Software Environment for Social Synthetic Biology

Phagebook is a Clotho 3.0 app that serves as a social networking interface incorporating lab inventory management and project/personnel networking. Phagebook facilitates collaboration amongst the synthetic biology community and like any other Clotho app, it directly communicates with Clotho apps for specification, design, assembly, and verification of synthetic biological systems.

Key features

    • Personal Profiles: Allows users to set up a profile, which lets them be a part of institutions, labs and other social organizations. Using their profiles, Phagebook users can update their status, share publications, receive updates about orders and projects, and add important events to their calender.
    • Research Profiles: Users have the ability to design, create, and share wetlab and computational synthetic biology projects. Projects can be associated with multiple Phagebook members and labs, which can help collaborative efforts.
    • Lab-Inventory Management: The Phagebook lab-inventory management system grants users easy access to an ordering portal, which lists vendors and product details. Depending on the user’s level of authorization, the user can create a new order or edit, approve, and submit an existing order.

Accessing Phagebook

Phagebook still in development, but will be available soon!

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Try Phagebook

Team

Kristel Tan
Inna Turshudzhyan
Allison Durkan
Anna Goncharova
Johan Ospina
Jacob Kozol

CIDAR Project Mentor

Prashant Vaidyanathan

Prashant Vaidyanathan


  • K. Lewis, A. Durkan, Turshudzhyan, K. Le Fort, N. Roehner, P. Vaidyanathan, and D. Densmore, Phagebook, poster presented at the International Workshop on Bio-Design Automation (IWBDA) , August, 2015.
    [BibTeX] [Download PDF]
    @Misc{LewisPhagebookIWBDA2015,
    Title = {Phagebook},
    Author = {Lewis, Kathleen and Durkan, Allison and Turshudzhyan and Le Fort, Kara and Roehner, Nicholas and Vaidyanathan, Prashant and Densmore, Douglas},
    HowPublished = {poster presented at the International Workshop on Bio-Design Automation (IWBDA)},
    Month = {August},
    Year = {2015},
    Owner = {Aaron Heuckroth},
    Timestamp = {2015.09.01},
    URL = {http://cidarlab.org/wp-content/uploads/2015/09/Phagebook-Poster-3.pdf}
    }

  • A. Durkan, K. Lewis, I. Turshudzhyan, K. L. Fort, N. Roehner, P. Vaidyanathan, and D. Densmore, Phagebook, poster presented at Synberc: Fall 2015 , September, 2015.
    [BibTeX] [Abstract] [Download PDF]
    http://cidarlab.org/wp-content/uploads/2016/09/phagebook-iwbda2016-2.pdf

    @Misc{turshudzhyan2015phagebooksynberc,
    author = {Allison Durkan and Kathleen Lewis and Inna Turshudzhyan and Kara Le Fort and Nicholas Roehner and Prashant Vaidyanathan and Douglas Densmore},
    title = {Phagebook},
    howpublished = {poster presented at Synberc: Fall 2015},
    month = {September},
    year = {2015},
    abstract = {http://cidarlab.org/wp-content/uploads/2016/09/phagebook-iwbda2016-2.pdf},
    url = {http://cidarlab.org/wp-content/uploads/2016/09/Phagebook-Poster-synberc-2015.pdf}
    }

  • I. Turshudzhyan, J. Ospina, A. Durkan, K. Tan, A. Goncharova, J. Kozol, P. Vaidyanathan, N. Roehner, and D. Densmore, Phagebook Alpha: A Software Environment for Social Synthetic Biology, poster presented at the International Workshop on Bio-Design Automation (IWBDA) , August, 2016.
    [BibTeX] [Abstract] [Download PDF]
    http://cidarlab.org/wp-content/uploads/2016/09/phagebook-iwbda2016-2.pdf

    @Misc{turshudzhyan2016phagebook,
    author = {Inna Turshudzhyan and Johan Ospina and Allison Durkan and Kristel Tan and Anna Goncharova and Jacob Kozol and Prashant Vaidyanathan and Nicholas Roehner and Douglas Densmore},
    title = {Phagebook Alpha: A Software Environment for Social Synthetic Biology},
    howpublished = {poster presented at the International Workshop on Bio-Design Automation (IWBDA)},
    month = {August},
    year = {2016},
    abstract = {http://cidarlab.org/wp-content/uploads/2016/09/phagebook-iwbda2016-2.pdf},
    url = {http://cidarlab.org/wp-content/uploads/2016/09/PhagebookPosterFinal.pdf}
    }