Featured Publications

  • E. Appleton, J. Tao, T. Haddock, and D. Densmore, “Interactive assembly algorithms for molecular cloning,” Nature Methods, 2014. doi:10.1038/nmeth.2939
    [BibTeX] [Download PDF]
    @Article{Appleton1038,
    Title = {Interactive assembly algorithms for molecular cloning},
    Author = {E Appleton and J Tao and T Haddock and D Densmore},
    Journal = {Nature Methods},
    Year = {2014},
    DOI = {10.1038/nmeth.2939},
    Keywords = {Raven, Synthetic Biology, Assembly, Design Automation},
    Timestamp = {2014.04.29},
    URL = {http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.2939.html}
    }

  • J. Beal, R. Weiss, D. Densmore, A. Adler, E. Appleton, J. Babb, S. Bhatia, N. Davidsohn, T. Haddock, J. Loyall, R. Schantz, V. Vasilev, and F. Yaman, “An end-to-end workflow for engineering of biological networks from high-level specifications,” ACS Synth Biol, vol. 1, iss. 8, pp. 317-331, 2012.
    [BibTeX] [Download PDF]
    @Article{pmid23651286,
    Title = {{{A}n end-to-end workflow for engineering of biological networks from high-level specifications}},
    Author = {Beal, J. and Weiss, R. and Densmore, D. and Adler, A. and Appleton, E. and Babb, J. and Bhatia, S. and Davidsohn, N. and Haddock, T. and Loyall, J. and Schantz, R. and Vasilev, V. and Yaman, F.},
    Journal = {ACS Synth Biol},
    Year = {2012},
    Month = {Aug},
    Number = {8},
    Pages = {317--331},
    Volume = {1},
    Keywords = {specification, synthetic biology},
    Timestamp = {2013.09.16},
    URL = {http://www.ncbi.nlm.nih.gov/pubmed/23651286}
    }

  • F. Yaman, S. Bhatia, A. Adler, D. Densmore, and J. Beal, “Automated Selection of Synthetic Biology Parts for Genetic Regulatory Networks,” ACS Synth Biol, vol. 1, iss. 8, pp. 332-344, 2012. doi:doi:10.1021/sb300032y
    [BibTeX] [Download PDF]
    @Article{pmid23651287,
    author = {Yaman, F. and Bhatia, S. and Adler, A. and Densmore, D. and Beal, J.},
    title = {Automated Selection of Synthetic Biology Parts for Genetic Regulatory Networks},
    journal = {ACS Synth Biol},
    year = {2012},
    volume = {1},
    number = {8},
    month = {Aug},
    pages = {332--344},
    doi = {doi:10.1021/sb300032y},
    eprint = {http://pubs.acs.org/doi/pdf/10.1021/sb300032y},
    url = {http://pubs.acs.org/doi/pdfplus/10.1021/sb300032y},
    keywords = {design, synthetic biology},
    timestamp = {2013.09.16},
    }

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